Passionate and determined, I am a bioinformatics engineer with a strong background in computer science. Curious and versatile, I like to learn new technologies and I strive to constantly improve myself.
Automatic generation and aggregation of metadata on scientific workflows. State-of-the art of existing standards for the representation of workflows and their metadata. Parsing of workflow scripts to extract their structure. Execution of scientific workflows to generate execution traces. Creation and deployment of a a scalable knowledge base enabling efficient metadata retrieval for the project ShareFAIR. Applying best practices on code reproducibility. Lead for the technical integration of the project modules and software Help coordinating the project (hackathons and events organisation, scheduling, communication).
Tools: Python, Docker, SPARQL, SQL, JavaScript, Bash
Optimisation, improvement and implementation of new functionalities in a Java application (mapoptics) for DNA optical maps visualisation. Improvement and implementation of a comparative genomic pipeline. Integration of a server and its Docker image for genomic data comparison.
Tools: Java, Docker, Bash
Building prototypes of applications using low code tools (Power Apps, and Power Automate). Preparation, moderation and follow-up of workshops with stakeholders from different departements of Siemens Healthineers using the design thinking approach. Analysis of technical feasibility, user research, problem framing.
Tools: Power Apps, Power Automate, Agile Methods
Implementation of IT tools optimising the search for candidates.
Tools: Python (PyPDF2, Pandas, JSON, tika, docx), Django, HTML, CSS
Programmation applied to biology: Bioinformatics with Python (Biopython, seaborn), data analysis and statistics using R, Java, Machine Learning using R. Gene sequencing with Next Generation Sequencing (NGS) and 3rd generation sequencing (3GS). Epigenetics, proteomics, metabolomics (R, QIIME2). Software development front and back end: data integration and interaction (SQLITE, Java Script, Node.js, html).
Group project: Building a pipeline to assess the quality of organelle assemblies and annotations (workflow creation with Snakemake). Building a script to automatically curate organelles assemblies, by assessing the quality of the predicted coding sequence (Biopython, BCBio).
Computer Science (C and C++, SQL, Python, Machine Learning), algorithmic, graph and optimisation, statistics and probabilities, microelectronics (embedded C, Assembleur), management.
Intensive preparation for the national competitive entrance exams leading to French engineering school.
Mention "very good"
Activities: European class German, MATh.EN.JEAN, latin
Communication within the campus (students, administration). Management of the association's social media accounts. Written and visual communication.
Fundraising, student awareness and mobilisation, organisation of events and partnerships for various associations (
Aïda
,
Règles élémentaires
,
Association Neurofibromatoses et Recklinghausen
).
Supervision and coordination.
Material management of the ISMIN Business Forum: booking and setting up rooms and equipment, organising the buffet and tea room, scheduling the team.
Communication with graduates and their families, internal communication within the campus.
Organisation of the School Gala, on the occasion of the graduation ceremony.
Organisational support
Help at dog shelter
